phylox.rearrangement.move.apply_move_sequence

phylox.rearrangement.move.apply_move_sequence(network, seq_moves)

Apply a sequence of moves to the network, not in place. returns the resulting network.

Parameters:

• network – a phylogenetic network (phylox.DiNetwork).

• seq_moves – a sequence of moves (list of phylox.rearrangement.move.Move) to apply to the network.

Returns:

a new phylogenetic network (phylox.DiNetwork) with the moves applied.

Example:

>>> from phylox import DiNetwork
>>> from phylox.rearrangement.move import apply_move_sequence, Move
>>> network = DiNetwork(
...     edges=[(0,1),(1,2),(1,3),(2,4),(2,5),(3,6),(3,7)],
... )
>>> seq_moves = [
...     Move(
...         move_type=MoveType.TAIL,
...         moving_edge=(3,6),
...         target=(0,1),
...         origin=(1,7),
...     ),
...     Move(
...         move_type=MoveType.VPLU,
...         start_edge=(1,2),
...         end_edge=(1,7),
...         network=network,
...     ),
... ]
>>> new_network = apply_move_sequence(network, seq_moves)
>>> edges = set(new_network.edges())
>>> edges == {(0, 3), (3, 1), (1, -1), (-1, 2), (1, -2), (-2, 7), (2, 4), (2, 5), (3, 6), (-1, -2)}
True