phylox.cherrypicking.base.find_reducible_pairs_with_second

phylox.cherrypicking.base.find_reducible_pairs_with_second(N, x)

Finds a list of reducible pairs (cherries and reticulated cherries) in the network N with leaf x as second element of the pair.

Parameters:

• N – a phylogenetic network.

• x – a leaf of the network N.

Returns:

a list of reducible pairs (cherries and reticulated cherries) in the network N with leaf x as second element of the pair.

Example:

>>> from phylox import DiNetwork
>>> from phylox.cherrypicking.base import find_reducible_pairs_with_second
>>> network = DiNetwork(
...     edges=[(-1,0), (0,1), (0,2), (1,2), (1,3), (2,4)],
... )
>>> find_reducible_pairs_with_second(network, 3)
[(4, 3)]